CIBSS - Centre for integrative Biological Signalling Studies CIBSS

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CIBSS Publications

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ChiRA: an integrated framework for chimeric read analysis from RNA-RNA interactome and RNA structurome data

Videm P, Kumar A, Zharkov O, Grüning BA, Backofen R.

Gigascience 2021; doi: 10.1093/gigascience/giaa158

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Quantification of nanoscale forces in lectin-mediated bacterial attachment and uptake into giant liposomes

Omidvar R, Ayala YA, Brandel A, Hasenclever L, Helmstädter M, Rohrbach A, Römer W, Madl J.

Nanoscale 2021; doi: 10.1039/d0nr07726g.

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PEtab-Interoperable specification of parameter estimation problems in systems biology

Schmiester L, Schälte Y, Bergmann FT, Camba T, Dudkin E, Egert J, Fröhlich F, Fuhrmann L, Hauber AL, Kemmer S, Lakrisenko P, Loos C, Merkt S, Müller W, Pathirana D, Raimúndez E, Refisch L, Rosenblatt M, Stapor PL, Städter P, Wang D, Wieland FG, Banga JR, Timmer J, Villaverde AF, Sahle S, Kreutz C, Hasenauer J, Weindl D.

PLoS Comput Biol 2021; doi.org/10.1371/journal.pcbi.1008646

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G3BPs tether the TSC complex to lysosomes and suppress mTORC1 signaling

Prentzell MT, Rehbein U, Cadena Sandoval M, De Meulemeester AS, Baumeister R, et al, .... Opitz CA, Thedieck K.

Cell 2021; doi: 10.1016/j.cell.2020.12.024

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Biopolymer segmentation from CLSM microscopy images using convolutional neural network

Asgharzadeh P, Birkhold AI, Özdemir B, Reski R, Röhrle O

Proceedings in Applied Mathematics and Mecanics 2021;  doi.org/10.1002/pamm.202000188

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Convergence of sphingolipid desaturation across over 500 million years of plant evolution

Resemann HC, Herrfurth C, Feussner K, Hornung E, Ostendorf AK, Gömann J, Mittag J, van Gessel N, Vries J, Ludwig-Müller J, Markham J, Reski R, Feussner I.

Nat Plants. 2021, doi: 10.1038/s41477-020-00844-3.

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Sarcoma classification by DNA methylation profiling

Koelsche C, Schrimpf D, Stichel D, .... Prinz M,  et al., ...Fröhling S, Pfister SM, von Deimling A.

Nat Commun 2021; doi: 10.1038/s41467-020-20603-4

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Hierarchical dynamics in allostery following ATP hydrolysis monitored by single molecule FRET measurements and MD simulations

Wolf S, Sohmen B, Hellenkamp B, Thurn J, Stock G, Hugel T

Chem Sci 2021; https://doi.org/10.1039/D0SC06134D

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The roles of microglia in viral encephalitis: from sensome to therapeutic targeting

Chhatbar C, Prinz M.

Cell Mol Immunol. 2021, doi: 10.1038/s41423-020-00620-5

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Direct regulation of the T Cell antigen receptor's activity by cholesterol

Pathan-Chhatbar S, Drechsler C, Richter K, Morath A, Wu W, OuYang B, Xu C, Schamel WW.

Front Cell Dev Biol. 2021, doi: 10.3389/fcell.2020.615996.

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