10 selected publications:

• Pluripotency factors determine gene expression repertoire at Zygotic Genome Activation. Gao, M., Veil, M., Rosenblatt, M., Riesle A.J., Gebhard, A., Hass, H., Buryanova, L., Yampolsky, L.Y., Grüning, B., Timmer, J., Onichtchouk, D*., 2022. Nature Communications 2022 Feb 10;13(1):788.
• Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements Baranasic, D., Hörtenhuber, M., Balwierz, P., Zehnder, T., Mukarram, A.K., Nepal, C., Varnai, C., Hadzhiev, Y., Jimenez-Gonzalez, A., Li, N., Wragg, J., D’Orazio, F., Díaz, N., Hernández-Rodríguez, B., Chen, Z., Stoiber, M., Dong, M., Stevens, I., Ross, S.E., Eagle, A., Martin, R., Obasaju, P., Rastegar, S., McGarvey, A.C., Kopp, W., Chambers, E., Wang, D., Kim, H.R., Acemel, R.D., Naranjo, S., Lapinski, M., Chong, V., Mathavan, S., Peers, B., Sauka-Spengler, T., Vingron, M., Carninci, P., Ohler, U., Lacadie, S.A., Burgess, S., Winata, C., van Eeden, F., Vaquerizas, J.M., Gómez-Skarmeta, J.L., Onichtchouk, D., Brown, B.J., Bogdanovic, O., Westerfield, M., Wardle, F.C., Daub, C.O., Lenhard, B., Müller, F., 2021. Nat Genet 2022 Jul;54(7):1037-1050.
• Pou5f3, SoxB1, and Nanog remodel chromatin on high nucleosome affinity regions at zygotic genome activation. Veil M., Yampolsky L.Y., Grüning B., Onichtchouk D*.Genome Research. 2019 Mar;29(3):383-395
• hnRNP-K Targets Open Chromatin in Mouse Embryonic Stem Cells in Concert with Multiple Regulators. Bakhmet EI, Nazarov IB, Gazizova AR, Vorobyeva NE, Kuzmin AA, Gordeev MN, Sinenko SA, Aksenov ND, Artamonova TO, Khodorkovskii MA, Alenina N, Onichtchouk D, Wu G, Schöler HR, Tomilin AN.  Stem Cells 2019 Aug;37(8):1018-1029.
• Maternal Nanog is required for the zebrafish embryo architecture and for cell viability during gastrulation. M. Veil, M.A. Schaechtle, M. Gao, V. I. N. Kirner, L. Buryanova, R. Grethen, and D. Onichtchouk*. Development. 2018 145(1).
• Pou5f1 transcription factor controls zygotic gene activation in vertebrates. M. Leichsenring, J. Maes, R. Mössner, W. Driever*, D. Onichtchouk*.  Science. 2013  Aug 30;341(6149):1005-9. Paper was selected for F1000Prime
• Zygotic Genome Activators, Developmental Timing, and Pluripotency. Onichtchouk D*, Driever W*.  Curr Top Dev Biol. 2016;116:273-97.
• A Pou5f1/Oct4 dependent Klf17, Klf2a, and Klf2b regulatory sub-network contributes to EVL and ectoderm development during zebrafish embryogenesis. K. Kotkamp, R. Mössner, A. Allen, D. Onichtchouk*, W. Driever*.  Dev Biol. 2014 Jan 15;385(2):433-47
• Pou5f1 contributes to dorsoventral patterning by positive regulation of vox and modulation of fgf8a expression. H.G. Belting, B. Wendik, K. Lunde, M. Leichsenring, R. Mössner, W. Driever*, D. Onichtchouk*.  Dev Biol. 2011 Aug 15;356(2):323-36.
• Zebrafish Pou5f1-dependent transcriptional networks in temporal control of early development. D. Onichtchouk*, F. Geier, B. Polok, D.M. Messerschmidt, R. Moessner, B. Wendik, S. Song, V. Taylor, J. Timmer, W. Driever*. Mol Syst Biol. 2010;6:354.