CIBSS - Centre for integrative Biological Signalling Studies CIBSS

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CIBSS Publications

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Towards Dissecting the Mechanism of Protein Phosphatase-1 Inhibition by Its C-Terminal Phosphorylation

Salvi F, Hoermann B, Del Pino García J, Fontanillo M, Derua R, Beullens M, Bollen M, Barabas O, Köhn M.

Chembiochem. 2021; doi: 10.1002/cbic.202000669

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Towards the molecular architecture of the peroxisomal receptor docking complex.

Lill P, Hansen T, Wendscheck D, Klink BU, Jeziorek T, Vismpas D, Miehling J, Bender J, Schummer A, Drepper F, Girzalsky W, Warscheid B, Erdmann R, Gatsogiannis C.

Proc Natl Acad Sci U S A. 2020  doi: 10.1073/pnas.2009502117

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CRISPRidentify: identification of CRISPR arrays using machine learning approach

Mitrofanov A, Alkhnbashi OS, Shmakov SA, Makarova KS, Koonin EV, Backofen R.

Nucleic Acids Res. 2021; doi: 10.1093/nar/gkaa1158.

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Protein tyrosine phosphatases in multiple myeloma

Abdollahi P, Köhn M, Børset M.

Cancer Lett. 2021; doi: 10.1016/j.canlet.2020.11.042

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Analysis of inositol phosphate metabolism by capillary electrophoresis electrospray ionization mass spectrometry

Qiu D, Wilson MS, Eisenbeis VB, Harmel RK, Riemer E, Haas TM, Wittwer C, Jork N, Gu C, Shears SB, Schaaf G, Kammerer B, Fiedler D, Saiardi A, Jessen HJ.

Nat Commun. 2020; doi: 10.1038/s41467-020-19928-x.

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Casboundary: Automated definition of integral Cas cassettes

Padilha VA, Alkhnbashi OS, Tran VD, Shah SA, L F Carvalho ACP, Backofen R.

Bioinformatics 2021; doi: 10.1093/bioinformatics/btaa984

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RNA nucleation by MSL2 induces selective X chromosome compartmentalization.

Valsecchi CI.K, Basilicata MF, Georgiev P, Gaub A, Seyfferth J, Kulkarni T, Panhale A, Semplicio G, Manjunath V, Holz H, Dasmeh P, and Akhtar A

Nature. 2021; doi: 10.1038/s41586-020-2935-z.

Fast and accurate structure probability estimation for simultaneous alignment and folding of RNAs with Markov chains

Miladi M, Raden M, Will S, Backofen R.

Algorithms Mol Biol. 2020; doi: 10.1186/s13015-020-00179-w

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Flavonol-mediated stabilization of PIN efflux complexes regulates polar auxin transport

Teale WD, Pasternak T, Dal Bosco C, Dovzhenko A, Kratzat K, Bildl W, Schwörer M, Falk T, Ruperti B, Schaefer JV, Shahriari M, Pilgermayer L, Li X, Lübben F, Plückthun A, Schulte U, Palme K.

EMBO J. 2021;40(1):e104416

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Characterization of pre-existing and induced SARS-CoV-2-specific CD8+ T cells

Schulien I, Kemming J, Oberhardt V, Wild K, Seidel LM, Killmer S, Sagar, Daul F, Salvat Lago M, Decker A, Luxenburger H, Binder B, Bettinger D, Sogukpinar O, Rieg S, Panning M, Huzly D, Schwemmle M, Kochs G, Waller CF, Nieters A, Duerschmied D, Emmerich F, Mei HE, Schulz AR, Llewellyn-Lacey S, Price DA, Boettler T, Bengsch B, Thimme R, Hofmann M, Neumann-Haefelin C.

Nat Med. 2020 Nov 12. Online ahead of print

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