Centre for Integrative Biological Signalling Studies
Cluster of Excellence, University of Freiburg

Prof. Dr. Thomas Brox

Prof. Dr. Thomas Brox

Department of Computer Science (Faculty of Engineering)
University of Freiburg

+49 761 203 8261

CIBSS Research Project:

 

10 selected publications:

  • U-Net: deep learning for cell counting, detection, and morphometry.
    Falk T, Mai D, Bensch R, Çiçek Ö, Abdulkadir A, Marrakchi Y, Böhm A, Deubner J, Jäckel Z, Seiwald K, Dovzhenko A, Tietz O, Dal Bosco C, Walsh S, Saltukoglu D, Tay TL, Prinz M, Palme K, Simons M, Diester I, Brox T, Ronneberger O (2019).
    Nat Methods. 16(1):67-70.
  • An objective comparison of cell-tracking algorithms.
    Ulman V, Maška M, Magnusson KEG, Ronneberger O, Haubold C, Harder N, Matula P, Matula P, Svoboda D, Radojevic M, Smal I, Rohr K, Jaldén J, Blau HM, Dzyubachyk O, Lelieveldt B, Xiao P, Li Y, Cho SY, Dufour AC, Olivo-Marin JC, Reyes-Aldasoro CC, Solis-Lemus JA, Bensch R, Brox T, Stegmaier J, Mikut R, Wolf S, Hamprecht FA, Esteves T, Quelhas P, Demirel Ö, Malmström L, Jug F, Tomancak P, Meijering E, Muñoz-Barrutia A, Kozubek M, Ortiz-de-Solorzano C (2017).
    Nat Methods 14, 1141-52.
  • Learning to Generate Chairs, Tables and Cars with Convolutional Networks.
    Dosovitskiy A, Springenberg J, Tatarchenko M, Brox T (2017).
    IEEE Trans Pattern Anal Mach Intell. 39, 692-705.
  • Spatiotemporal deformable prototypes for motion anomaly detection.
    Bensch R, Scherf N, Huisken J, Brox T, Ronneberger O (2017).
    International Journal of Computer Vision 122(3), 502-23.
  • Discriminative unsupervised feature learning with exemplar convolutional neural networks.
    Dosovitskiy A, Fischer P, Springenberg JT, Riedmiller M, Brox T (2016).
    IEEE Trans. Pattern. Anal. Mach. Intell. 38, 1734-47.
  • FlowNet: learning optical flow with convolutional networks.
    Dosovitskiy A, Fischer P, Ilg E, Häusser P, Hazirbas C, Golkov V, Smagt P, Cremers D, Brox T (2015).
    IEEE International Conference on Computer Vision (ICCV)
  • Segmentation of Moving Objects by Long Term Video Analysis.
    Ochs P, Malik J, Brox T (2014).
    IEEE Trans Pattern Anal Mach Intell. 36, 1187-200.
  • ViBE-Z: a framework for 3D virtual colocalization analysis in zebrafish larval brains.
    Ronneberger O, Liu K, Rath M, Rueβ D, Mueller T, Skibbe H, Drayer B, Schmidt T, Filippi A, Nitschke R, Brox T, Burkhardt H, Driever W (2012).
    Nat Methods 9, 735-42.
  • Large displacement optical flow: descriptor matching in variational motion estimation.
    Brox T, Malik J (2011).
    IEEE Trans Pattern Anal Mach. Intell. 33, 500-13.
  • Inversin relays Frizzled-8 signals to promote proximal pronephros development.
    Lienkamp S, Ganner A, Boehlke C, Schmidt T, Arnold SJ, Schäfer T, Romaker D, Schuler J, Hoff S, Powelske C, Eifler A, Krönig C, Bullerkotte A, Nitschke R, Kuehn EW, Kim E, Burkhardt H, Brox T, Ronneberger O, Gloy J, Walz G (2010).
    Proc Natl Acad Sci U S A. 107, 20388-93.